"Funnel" attracts bonding partners to biomolecule
Water movement as detection aid for molecules
© Havenith/Conti Nibali
Choreography of water movements
New experimental technologies, such as terahertz absorption spectroscopy, pave the way for studies of the dynamics of water molecules surrounding biomolecules. Using this method, the researchers proved some time ago that proteins influence water molecules in their surroundings: they determine the choreography of their movements. This effect occurs not only in the immediate vicinity of the protein, but can also be detected in the remote layers of the surrounding water molecules.
Collective interaction helps choose binding partner
But what purpose would such an interaction have? The researchers have come closer to finding an answer to this question by employing molecular dynamics simulations. It was demonstrated that the movement of water molecules in the vicinity of the protein’s active centre, the so-called binding pocket, is connected to potential binding partners in the water solvent. "This movement causes the water molecules to form a hydration funnel of sorts, making up part of the molecular recognition mechanism in both partners," explains Prof Dr Martina Havenith-Newen. Moreover, the movements of the water molecules have proved to be specific for certain binding partners. Thus, if there are different potential binding candidates in the solvent, all competing to bind to the protein, these collective water movements are thought to assist binding.To conclude, such correlated water movements could support the interaction of biomolecules like enzymes and proteins with their binding partners and play a significant role in their mutual recognition, allowing the biomolecule to select or reject certain binding partners.
Original publication
Other news from the department science
Most read news
More news from our other portals
See the theme worlds for related content
Topic World Spectroscopy
Investigation with spectroscopy gives us unique insights into the composition and structure of materials. From UV-Vis spectroscopy to infrared and Raman spectroscopy to fluorescence and atomic absorption spectroscopy, spectroscopy offers us a wide range of analytical techniques to precisely characterize substances. Immerse yourself in the fascinating world of spectroscopy!
Topic World Spectroscopy
Investigation with spectroscopy gives us unique insights into the composition and structure of materials. From UV-Vis spectroscopy to infrared and Raman spectroscopy to fluorescence and atomic absorption spectroscopy, spectroscopy offers us a wide range of analytical techniques to precisely characterize substances. Immerse yourself in the fascinating world of spectroscopy!