To use all functions of this page, please activate cookies in your browser.
my.chemeurope.com
With an accout for my.chemeurope.com you can always see everything at a glance – and you can configure your own website and individual newsletter.
- My watch list
- My saved searches
- My saved topics
- My newsletter
Mass spectrometry data formats
Here the main mass spectrometry data formats are listed. Additional recommended knowledge
mzXMLmzXML is a XML (eXtensible Markup Language) based common file format for proteomics mass spectrometric data.[1][2] Most mass spectrometers do not directly produce mzXML data, but there are several tools available that generate mzXML files from native acquisition files. An open source project known as Sashimi[3] offers a collection of converter programs for some common mass spectrometric file formats. Currently there are converters available at Sashimi for ThermoFinnigan (Xcalibur), MassWolf (Micromass MassLynx) and mzStar (SCIEX/ABI Analyst). Bruker's free CompassXport tool will nicely generate mzXML (and now mzData) files for many of their native file formats. mzDataThe Human Proteome Organization (HUPO) has developed a common file format called mzData which offers similar functionality to mzXML.[4] mzMLThe existence of the two above standard formats for proteomics data is an undesirable state. Thus, mzData and mzXML developers are currently developing the joint format called mzML.[4][5] ViewersKnown viewers for mzXML and mzData:
See alsoReferences
Categories: Mass spectrometry software | Proteomics |
|||
This article is licensed under the GNU Free Documentation License. It uses material from the Wikipedia article "Mass_spectrometry_data_formats". A list of authors is available in Wikipedia. |