ICM-Browser

ICM-Browser is a free product of Molsoft, and provides access to structural biology data and protein families. It reads PDB or alignment files directly from online databases and provides a molecular graphics environment with various representations of proteins, DNA and RNA, and multiple sequence alignments.

Additional recommended knowledge

What is the Sensitivity of my Balance?

What is the Correct Way to Check Repeatability in Balances?

How to ensure accurate weighing results every day?

Supported file formats

• PDB structure files
• MDL molecular format
• Tripos mol2 format
• Tables/spreadsheets in portable *.csv or icm format
• Sequence and alignment files (fasta, swissprot, and other formats)
• Wavefront 3D objects
• ICM objects and ICM binary archives with multiple objects or molecular movies

Selected features

• PDB search engine with direct local access to all PDB files without downloading the database
• a molecular graphics tool box including multiple representations, fog effects, stereo, adjustable perspective, and multilevel selection
• colored alignments of publication quality, consensus coloring
• cross-selection between 3D objects, sequences and alignments
• selections at the secondary structure level

References

• R. Abagyan, W. H. Lee, E. Raush, L. Budagyan, M. Totrov, M. Sundstrom and B. D. Marsden, Disseminating structural genomics data to the public: from a data dump to an animated story, Trends in Biochemical Sciences, 31, 76-78, 2006. doi:10.1016/j.tibs.2005.12.006

See also

• Internal Coordinate Mechanics
• Molsoft